Clustal Omega  1.1.0
hhalign_wrapper.h
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1 /*********************************************************************
2  * Clustal Omega - Multiple sequence alignment
3  *
4  * Copyright (C) 2010 University College Dublin
5  *
6  * Clustal-Omega is free software; you can redistribute it and/or
7  * modify it under the terms of the GNU General Public License as
8  * published by the Free Software Foundation; either version 2 of the
9  * License, or (at your option) any later version.
10  *
11  * This file is part of Clustal-Omega.
12  *
13  ********************************************************************/
14 
15 /*
16  * RCS $Id: hhalign_wrapper.h 266 2011-10-20 16:04:11Z andreas $
17  */
18 
19 extern void
20 SetDefaultHhalignPara(hhalign_para *prHhalignPara);
21 
22 
23 extern double
24 HHalignWrapper(mseq_t *mseq, int *piOrderLR,
25  double *pdSeqWeights, int iNodeCount,
26  hmm_light *prHMMList, int iHMMCount,
27  int iProfProfSeparator, hhalign_para rHhalignPara);
28 void
29 SanitiseUnknown(mseq_t *mseq);