Clustal Omega
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clustal
hhalign_wrapper.h
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/*********************************************************************
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* Clustal Omega - Multiple sequence alignment
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*
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* Copyright (C) 2010 University College Dublin
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*
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* Clustal-Omega is free software; you can redistribute it and/or
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* modify it under the terms of the GNU General Public License as
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* published by the Free Software Foundation; either version 2 of the
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* License, or (at your option) any later version.
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*
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* This file is part of Clustal-Omega.
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*
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********************************************************************/
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/*
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* RCS $Id: hhalign_wrapper.h 266 2011-10-20 16:04:11Z andreas $
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*/
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extern
void
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SetDefaultHhalignPara
(hhalign_para *prHhalignPara);
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extern
double
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HHalignWrapper
(
mseq_t
*mseq,
int
*piOrderLR,
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double
*pdSeqWeights,
int
iNodeCount,
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hmm_light *prHMMList,
int
iHMMCount,
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int
iProfProfSeparator, hhalign_para rHhalignPara);
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void
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SanitiseUnknown
(
mseq_t
*mseq);
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