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symmatrix.h
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/*********************************************************************
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* Clustal Omega - Multiple sequence alignment
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*
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* Copyright (C) 2010 University College Dublin
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*
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* Clustal-Omega is free software; you can redistribute it and/or
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* modify it under the terms of the GNU General Public License as
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* published by the Free Software Foundation; either version 2 of the
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* License, or (at your option) any later version.
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*
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* This file is part of Clustal-Omega.
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*
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********************************************************************/
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/*
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* RCS $Id: symmatrix.h 216 2011-03-19 10:11:53Z andreas $
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*/
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#ifndef CLUSTALO_SYMMATRIX_H
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#define CLUSTALO_SYMMATRIX_H
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typedef
struct
{
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int
nrows
;
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int
ncols
;
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double
**
data
;
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}
symmatrix_t
;
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extern
int
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NewSymMatrix
(
symmatrix_t
**symmat,
const
int
nrows,
const
int
ncols);
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extern
void
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SymMatrixSetValue
(
symmatrix_t
*symmat,
const
int
i,
const
int
j,
const
double
value);
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extern
double
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SymMatrixGetValue
(
symmatrix_t
*symmat,
const
int
i,
const
int
j);
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extern
void
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SymMatrixGetValueP
(
double
**value,
symmatrix_t
*symmat,
const
int
i,
const
int
j);
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extern
void
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FreeSymMatrix
(
symmatrix_t
**symmat);
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extern
void
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SymMatrixPrint
(
symmatrix_t
*symmat,
char
**labels,
const
char
*path);
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extern
int
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SymMatrixRead
(
char
*pcFileIn,
symmatrix_t
**prSymMat_p);
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#endif
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