org.biojava3.ws.alignment
public interface RemotePairwiseAlignmentService
Modifier and Type | Method and Description |
---|---|
java.io.InputStream |
getAlignmentResults(java.lang.String rid,
RemotePairwiseAlignmentOutputProperties out)
Getting the actual alignment results from this instantiated service for a given ID with specific
formatting parameters held in a RemotePairwiseAlignmentOutputProperties-implemented object.
|
boolean |
isReady(java.lang.String id,
long present)
Simple method to check if the specified request has been completed by the service used.
|
java.lang.String |
sendAlignmentRequest(Sequence<Compound> seq,
RemotePairwiseAlignmentProperties rpa)
Doing the actual analysis on the instantiated service using specified parameters and the RichSequence object
|
java.lang.String |
sendAlignmentRequest(java.lang.String str,
RemotePairwiseAlignmentProperties rpa)
Doing the actual analysis on the instantiated service using specified parameters on the string representation
of the Sequence object
|
java.lang.String sendAlignmentRequest(Sequence<Compound> seq, RemotePairwiseAlignmentProperties rpa) throws java.lang.Exception
java.lang.Exception
java.lang.String sendAlignmentRequest(java.lang.String str, RemotePairwiseAlignmentProperties rpa) throws java.lang.Exception
java.lang.Exception
boolean isReady(java.lang.String id, long present) throws java.lang.Exception
id
- :an ID for an alignment requestpresent
- :a long integer value representing the actual timejava.lang.Exception
- if the ID does not exist.java.io.InputStream getAlignmentResults(java.lang.String rid, RemotePairwiseAlignmentOutputProperties out) throws java.lang.Exception
rid
- :a String with the request ID for this single alignment runout
- :a RemotePairwiseAlignmentOutputProperties with the specific output instructions.InputStream
with the actual alignment resultsjava.lang.Exception