org.biojava.bio.structure.align.ce
public class GuiWrapper extends java.lang.Object
Constructor and Description |
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GuiWrapper() |
Modifier and Type | Method and Description |
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static java.lang.Object |
display(AFPChain afpChain,
Atom[] ca1,
Atom[] ca2) |
static Structure |
getAlignedStructure(Atom[] ca1,
Atom[] ca2) |
static Atom[] |
getAtomArray(Atom[] ca,
java.util.List<Group> hetatoms,
java.util.List<Group> nucs) |
static javax.swing.JPanel |
getScaleableMatrixPanel(Matrix m) |
static boolean |
isGuiModuleInstalled() |
static Group[] |
prepareGroupsForDisplay(AFPChain afpChain,
Atom[] ca1,
Atom[] ca2) |
static void |
showAlignmentGUI() |
static void |
showAlignmentImage(AFPChain afpChain,
Atom[] ca1,
Atom[] ca2,
java.lang.Object jmol) |
public static boolean isGuiModuleInstalled()
public static java.lang.Object display(AFPChain afpChain, Atom[] ca1, Atom[] ca2) throws java.lang.ClassNotFoundException, java.lang.NoSuchMethodException, java.lang.reflect.InvocationTargetException, java.lang.IllegalAccessException
java.lang.ClassNotFoundException
java.lang.NoSuchMethodException
java.lang.reflect.InvocationTargetException
java.lang.IllegalAccessException
public static void showAlignmentImage(AFPChain afpChain, Atom[] ca1, Atom[] ca2, java.lang.Object jmol) throws java.lang.ClassNotFoundException, java.lang.NoSuchMethodException, java.lang.reflect.InvocationTargetException, java.lang.IllegalAccessException
java.lang.ClassNotFoundException
java.lang.NoSuchMethodException
java.lang.reflect.InvocationTargetException
java.lang.IllegalAccessException
public static void showAlignmentGUI() throws java.lang.ClassNotFoundException, java.lang.NoSuchMethodException, java.lang.reflect.InvocationTargetException, java.lang.IllegalAccessException
java.lang.ClassNotFoundException
java.lang.NoSuchMethodException
java.lang.reflect.InvocationTargetException
java.lang.IllegalAccessException
public static Structure getAlignedStructure(Atom[] ca1, Atom[] ca2) throws java.lang.ClassNotFoundException, java.lang.NoSuchMethodException, java.lang.reflect.InvocationTargetException, java.lang.IllegalAccessException
java.lang.ClassNotFoundException
java.lang.NoSuchMethodException
java.lang.reflect.InvocationTargetException
java.lang.IllegalAccessException
public static javax.swing.JPanel getScaleableMatrixPanel(Matrix m) throws java.lang.ClassNotFoundException, java.lang.NoSuchMethodException, java.lang.reflect.InvocationTargetException, java.lang.IllegalAccessException, java.lang.InstantiationException
java.lang.ClassNotFoundException
java.lang.NoSuchMethodException
java.lang.reflect.InvocationTargetException
java.lang.IllegalAccessException
java.lang.InstantiationException
public static Group[] prepareGroupsForDisplay(AFPChain afpChain, Atom[] ca1, Atom[] ca2) throws java.lang.ClassNotFoundException, java.lang.NoSuchMethodException, java.lang.reflect.InvocationTargetException, java.lang.IllegalAccessException
java.lang.ClassNotFoundException
java.lang.NoSuchMethodException
java.lang.reflect.InvocationTargetException
java.lang.IllegalAccessException
public static Atom[] getAtomArray(Atom[] ca, java.util.List<Group> hetatoms, java.util.List<Group> nucs) throws java.lang.ClassNotFoundException, java.lang.NoSuchMethodException, java.lang.reflect.InvocationTargetException, java.lang.IllegalAccessException
java.lang.ClassNotFoundException
java.lang.NoSuchMethodException
java.lang.reflect.InvocationTargetException
java.lang.IllegalAccessException