org.biojava3.core.sequence.io
public class FastaGeneWriter extends java.lang.Object
Constructor and Description |
---|
FastaGeneWriter(java.io.OutputStream os,
java.util.Collection<GeneSequence> sequences,
FastaHeaderFormatInterface<GeneSequence,NucleotideCompound> headerFormat,
boolean showExonUppercase) |
FastaGeneWriter(java.io.OutputStream os,
java.util.Collection<GeneSequence> sequences,
FastaHeaderFormatInterface<GeneSequence,NucleotideCompound> headerFormat,
boolean showExonUppercase,
int lineLength) |
Modifier and Type | Method and Description |
---|---|
int |
getLineLength() |
static void |
main(java.lang.String[] args) |
void |
process() |
void |
setLineLength(int lineLength) |
public FastaGeneWriter(java.io.OutputStream os, java.util.Collection<GeneSequence> sequences, FastaHeaderFormatInterface<GeneSequence,NucleotideCompound> headerFormat, boolean showExonUppercase)
os
- sequences
- headerFormat
- showExonUppercase
- public FastaGeneWriter(java.io.OutputStream os, java.util.Collection<GeneSequence> sequences, FastaHeaderFormatInterface<GeneSequence,NucleotideCompound> headerFormat, boolean showExonUppercase, int lineLength)
os
- sequences
- headerFormat
- showExonUppercase
- lineLength
- public void process() throws java.lang.Exception
java.lang.Exception
public int getLineLength()
public void setLineLength(int lineLength)
lineLength
- the lineLength to setpublic static void main(java.lang.String[] args)