org.forester.sdi
public class SDIse extends SDI
Constructor and Description |
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SDIse(Phylogeny gene_tree,
Phylogeny species_tree)
Constructor which sets the gene tree and the species tree to be compared.
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computeMappingCostL, getDuplicationsSum, getGeneTree, getSpeciesTree, toString
public SDIse(Phylogeny gene_tree, Phylogeny species_tree)
(Last modified: 01/11/01)
gene_tree
- reference to a rooted binary gene Phylogeny to which assign
duplication vs speciation, must have species names in the
species name fields for all external nodesspecies_tree
- reference to a rooted binary species Phylogeny which might get
stripped in the process, must have species names in the
species name fields for all external nodes#infer(boolean)
,
SDI.computeMappingCostL()