org.forester.development
Constructor and Description |
---|
SimpleMutableMsa(java.lang.String[] names,
java.lang.String[] seqs) |
Modifier and Type | Method and Description |
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void |
deleteResidueAt(int col,
int row) |
double |
getGapScore() |
int |
getLength() |
int |
getNumberOfSequences() |
char |
getResidueAt(int col,
int row) |
double |
getScore() |
Sequence |
getSequence(int i) |
void |
insertResidueAt(int col,
int row) |
public SimpleMutableMsa(java.lang.String[] names, java.lang.String[] seqs)
public void deleteResidueAt(int col, int row)
public double getGapScore()
public int getNumberOfSequences()
getNumberOfSequences
in interface Msa
public char getResidueAt(int col, int row)
getResidueAt
in interface Msa
public double getScore()
public Sequence getSequence(int i)
getSequence
in interface Msa
public void insertResidueAt(int col, int row)