org.biojava3.core.sequence
public class BasicSequence<C extends Compound> extends AbstractSequence<C>
Sequence
which describes
your domain.AbstractSequence.AnnotationType
Constructor and Description |
---|
BasicSequence(ProxySequenceReader<C> reader) |
BasicSequence(java.lang.String sequence,
CompoundSet<C> compoundSet) |
addFeature, addFeature, addNote, countCompounds, getAccession, getAnnotationType, getAsList, getBioBegin, getBioEnd, getCompoundAt, getCompoundSet, getDatabaseReferences, getDescription, getFeatures, getFeatures, getFeatures, getFeaturesByType, getFeaturesKeyWord, getIndexOf, getInverse, getLastIndexOf, getLength, getNotesList, getOriginalHeader, getParentSequence, getProxySequenceReader, getSequenceAsString, getSequenceAsString, getSequenceScore, getSource, getSubSequence, getTaxonomy, getUserCollection, iterator, removeFeature, removeNote, setAccession, setAnnotationType, setBioBegin, setBioEnd, setCompoundSet, setDatabaseReferences, setDescription, setFeaturesKeyWord, setNotesList, setOriginalHeader, setParentSequence, setProxySequenceReader, setSequenceScore, setSource, setTaxonomy, setUserCollection, toString
public BasicSequence(java.lang.String sequence, CompoundSet<C> compoundSet)
public BasicSequence(ProxySequenceReader<C> reader)