org.forester.io.parsers.phyloxml
public final class PhyloXmlMapping extends java.lang.Object
Modifier and Type | Field and Description |
---|---|
static java.lang.String |
ACCESSION |
static java.lang.String |
ACCESSION_SOURCE_ATTR |
static java.lang.String |
ANNOTATION |
static java.lang.String |
ANNOTATION_DESC |
static java.lang.String |
ANNOTATION_EVIDENCE_ATTR |
static java.lang.String |
ANNOTATION_REF_ATTR |
static java.lang.String |
ANNOTATION_SOURCE_ATTR |
static java.lang.String |
ANNOTATION_TYPE_ATTR |
static java.lang.String |
BINARY_CHARACTER |
static java.lang.String |
BINARY_CHARACTERS |
static java.lang.String |
BINARY_CHARACTERS_GAINED |
static java.lang.String |
BINARY_CHARACTERS_GAINED_COUNT_ATTR |
static java.lang.String |
BINARY_CHARACTERS_LOST |
static java.lang.String |
BINARY_CHARACTERS_LOST_COUNT_ATTR |
static java.lang.String |
BINARY_CHARACTERS_PRESENT |
static java.lang.String |
BINARY_CHARACTERS_PRESENT_COUNT_ATTR |
static java.lang.String |
BINARY_CHARACTERS_TYPE_ATTR |
static java.lang.String |
BRANCH_LENGTH |
static java.lang.String |
CLADE |
static java.lang.String |
CLADE_DATE |
static java.lang.String |
CLADE_DATE_DESC |
static java.lang.String |
CLADE_DATE_MAX |
static java.lang.String |
CLADE_DATE_MIN |
static java.lang.String |
CLADE_DATE_UNIT |
static java.lang.String |
CLADE_DATE_VALUE |
static java.lang.String |
COLOR |
static java.lang.String |
COLOR_BLUE |
static java.lang.String |
COLOR_GREEN |
static java.lang.String |
COLOR_RED |
static java.lang.String |
CONFIDENCE |
static java.lang.String |
CONFIDENCE_TYPE_ATTR |
static java.lang.String |
DISTRIBUTION |
static java.lang.String |
DISTRIBUTION_DESC |
static java.lang.String |
EVENT_DUPLICATIONS |
static java.lang.String |
EVENT_LOSSES |
static java.lang.String |
EVENT_SPECIATIONS |
static java.lang.String |
EVENT_TYPE |
static java.lang.String |
EVENTS |
static java.lang.String |
ID_REF |
static java.lang.String |
IDENTIFIER |
static java.lang.String |
IDENTIFIER_PROVIDER_ATTR |
static java.lang.String |
NODE_NAME |
static java.lang.String |
PHYLOGENY |
static java.lang.String |
PHYLOGENY_BRANCHLENGTH_UNIT_ATTR |
static java.lang.String |
PHYLOGENY_DESCRIPTION |
static java.lang.String |
PHYLOGENY_IS_REROOTABLE_ATTR |
static java.lang.String |
PHYLOGENY_IS_ROOTED_ATTR |
static java.lang.String |
PHYLOGENY_NAME |
static java.lang.String |
PHYLOGENY_TYPE_ATTR |
static java.lang.String |
POINT |
static java.lang.String |
POINT_ALTITUDE |
static java.lang.String |
POINT_ALTITUDE_UNIT_ATTR |
static java.lang.String |
POINT_GEODETIC_DATUM |
static java.lang.String |
POINT_LATITUDE |
static java.lang.String |
POINT_LONGITUDE |
static java.lang.String |
PROPERTY |
static java.lang.String |
PROPERTY_APPLIES_TO |
static java.lang.String |
PROPERTY_DATATYPE |
static java.lang.String |
PROPERTY_REF |
static java.lang.String |
PROPERTY_UNIT |
static java.lang.String |
REFERENCE |
static java.lang.String |
REFERENCE_DESC |
static java.lang.String |
REFERENCE_DOI_ATTR |
static java.lang.String |
SEQUENCE |
static java.lang.String |
SEQUENCE_DOMAIN_ARCHITECTURE_DOMAIN |
static java.lang.String |
SEQUENCE_DOMAIN_ARCHITECTURE_LENGTH |
static java.lang.String |
SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_CONFIDENCE |
static java.lang.String |
SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_FROM |
static java.lang.String |
SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_TO |
static java.lang.String |
SEQUENCE_DOMAIN_ARCHITECURE |
static java.lang.String |
SEQUENCE_LOCATION |
static java.lang.String |
SEQUENCE_MOL_SEQ |
static java.lang.String |
SEQUENCE_NAME |
static java.lang.String |
SEQUENCE_SYMBOL |
static java.lang.String |
SEQUENCE_TYPE |
static java.lang.String |
TAXONOMY |
static java.lang.String |
TAXONOMY_AUTHORITY |
static java.lang.String |
TAXONOMY_CODE |
static java.lang.String |
TAXONOMY_COMMON_NAME |
static java.lang.String |
TAXONOMY_RANK |
static java.lang.String |
TAXONOMY_SCIENTIFIC_NAME |
static java.lang.String |
TAXONOMY_SYNONYM |
static java.lang.String |
TYPE_ATTR |
static java.lang.String |
URI |
static java.lang.String |
URI_DESC_ATTR |
static java.lang.String |
WIDTH |
public static final java.lang.String PHYLOGENY
public static final java.lang.String PHYLOGENY_NAME
public static final java.lang.String PHYLOGENY_DESCRIPTION
public static final java.lang.String PHYLOGENY_IS_REROOTABLE_ATTR
public static final java.lang.String PHYLOGENY_BRANCHLENGTH_UNIT_ATTR
public static final java.lang.String PHYLOGENY_IS_ROOTED_ATTR
public static final java.lang.String PHYLOGENY_TYPE_ATTR
public static final java.lang.String CLADE
public static final java.lang.String NODE_NAME
public static final java.lang.String SEQUENCE
public static final java.lang.String SEQUENCE_NAME
public static final java.lang.String SEQUENCE_SYMBOL
public static final java.lang.String ACCESSION
public static final java.lang.String ACCESSION_SOURCE_ATTR
public static final java.lang.String SEQUENCE_LOCATION
public static final java.lang.String SEQUENCE_MOL_SEQ
public static final java.lang.String ANNOTATION
public static final java.lang.String ANNOTATION_DESC
public static final java.lang.String ANNOTATION_REF_ATTR
public static final java.lang.String ANNOTATION_EVIDENCE_ATTR
public static final java.lang.String ANNOTATION_TYPE_ATTR
public static final java.lang.String TAXONOMY
public static final java.lang.String TAXONOMY_SCIENTIFIC_NAME
public static final java.lang.String TAXONOMY_COMMON_NAME
public static final java.lang.String TAXONOMY_CODE
public static final java.lang.String TAXONOMY_RANK
public static final java.lang.String TAXONOMY_SYNONYM
public static final java.lang.String TAXONOMY_AUTHORITY
public static final java.lang.String DISTRIBUTION
public static final java.lang.String BINARY_CHARACTERS
public static final java.lang.String BINARY_CHARACTERS_PRESENT
public static final java.lang.String BINARY_CHARACTERS_GAINED
public static final java.lang.String BINARY_CHARACTERS_LOST
public static final java.lang.String BINARY_CHARACTERS_TYPE_ATTR
public static final java.lang.String BINARY_CHARACTERS_PRESENT_COUNT_ATTR
public static final java.lang.String BINARY_CHARACTERS_GAINED_COUNT_ATTR
public static final java.lang.String BINARY_CHARACTERS_LOST_COUNT_ATTR
public static final java.lang.String BRANCH_LENGTH
public static final java.lang.String CONFIDENCE
public static final java.lang.String CONFIDENCE_TYPE_ATTR
public static final java.lang.String COLOR
public static final java.lang.String COLOR_RED
public static final java.lang.String COLOR_GREEN
public static final java.lang.String COLOR_BLUE
public static final java.lang.String SEQUENCE_DOMAIN_ARCHITECTURE_DOMAIN
public static final java.lang.String SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_FROM
public static final java.lang.String SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_TO
public static final java.lang.String SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_CONFIDENCE
public static final java.lang.String IDENTIFIER
public static final java.lang.String IDENTIFIER_PROVIDER_ATTR
public static final java.lang.String URI
public static final java.lang.String WIDTH
public static final java.lang.String EVENTS
public static final java.lang.String EVENT_TYPE
public static final java.lang.String EVENT_DUPLICATIONS
public static final java.lang.String EVENT_SPECIATIONS
public static final java.lang.String EVENT_LOSSES
public static final java.lang.String SEQUENCE_DOMAIN_ARCHITECURE
public static final java.lang.String SEQUENCE_DOMAIN_ARCHITECTURE_LENGTH
public static final java.lang.String SEQUENCE_TYPE
public static final java.lang.String BINARY_CHARACTER
public static final java.lang.String URI_DESC_ATTR
public static final java.lang.String TYPE_ATTR
public static final java.lang.String REFERENCE
public static final java.lang.String REFERENCE_DOI_ATTR
public static final java.lang.String REFERENCE_DESC
public static final java.lang.String PROPERTY
public static final java.lang.String PROPERTY_REF
public static final java.lang.String PROPERTY_UNIT
public static final java.lang.String PROPERTY_DATATYPE
public static final java.lang.String PROPERTY_APPLIES_TO
public static final java.lang.String ID_REF
public static final java.lang.String ANNOTATION_SOURCE_ATTR
public static final java.lang.String DISTRIBUTION_DESC
public static final java.lang.String POINT
public static final java.lang.String POINT_LONGITUDE
public static final java.lang.String POINT_LATITUDE
public static final java.lang.String POINT_ALTITUDE
public static final java.lang.String POINT_ALTITUDE_UNIT_ATTR
public static final java.lang.String POINT_GEODETIC_DATUM
public static final java.lang.String CLADE_DATE
public static final java.lang.String CLADE_DATE_UNIT
public static final java.lang.String CLADE_DATE_DESC
public static final java.lang.String CLADE_DATE_MIN
public static final java.lang.String CLADE_DATE_MAX
public static final java.lang.String CLADE_DATE_VALUE