org.biojava.bio.structure.scop
public class BerkeleyScopInstallation extends ScopInstallation implements ScopDatabase
Modifier and Type | Field and Description |
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static java.lang.String |
claFileName |
static java.lang.String |
desFileName |
static java.lang.String |
hieFileName |
DEFAULT_VERSION, FILESPLIT, NEWLINE, SCOP_DOWNLOAD, scopDownloadURL, scopVersion
Constructor and Description |
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BerkeleyScopInstallation() |
Modifier and Type | Method and Description |
---|---|
protected void |
downloadClaFile() |
protected void |
downloadDesFile() |
protected void |
downloadHieFile() |
downloadFileFromRemote, ensureClaInstalled, ensureDesInstalled, ensureHieInstalled, filterByClassificationId, filterByDescription, filterByDomainName, getByCategory, getCacheLocation, getClaFilename, getDesFilename, getDomainByScopID, getDomainsForPDB, getHieFilename, getScopDescriptionBySunid, getScopDomainsBySunid, getScopDownloadURL, getScopNode, getScopVersion, getTree, setCacheLocation, setScopDownloadURL, setScopVersion
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
filterByClassificationId, filterByDescription, filterByDomainName, getByCategory, getDomainByScopID, getDomainsForPDB, getScopDescriptionBySunid, getScopDomainsBySunid, getScopNode, getScopVersion, getTree
public static final java.lang.String claFileName
public static final java.lang.String desFileName
public static final java.lang.String hieFileName
protected void downloadClaFile() throws java.io.FileNotFoundException, java.io.IOException
downloadClaFile
in class ScopInstallation
java.io.FileNotFoundException
java.io.IOException
protected void downloadDesFile() throws java.io.FileNotFoundException, java.io.IOException
downloadDesFile
in class ScopInstallation
java.io.FileNotFoundException
java.io.IOException
protected void downloadHieFile() throws java.io.FileNotFoundException, java.io.IOException
downloadHieFile
in class ScopInstallation
java.io.FileNotFoundException
java.io.IOException