org.forester.sdi
public class ORcount extends java.lang.Object
Constructor and Description |
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ORcount(Phylogeny[] trees)
Default contructor which
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Modifier and Type | Method and Description |
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void |
countSharedAncestralClades(Phylogeny[] trees,
int bootstrap_threshold) |
void |
countSharedAncestralClades(Phylogeny tree,
int bootstrap_threshold,
java.lang.String[] group_1,
java.lang.String[] group_2) |
void |
countSuperOrthologousRelations(int bootstrap_threshold) |
static void |
main(java.lang.String[] args)
Main method for this class.
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void |
reset() |
public ORcount(Phylogeny[] trees)
public void countSharedAncestralClades(Phylogeny tree, int bootstrap_threshold, java.lang.String[] group_1, java.lang.String[] group_2)
public void countSharedAncestralClades(Phylogeny[] trees, int bootstrap_threshold)
public void countSuperOrthologousRelations(int bootstrap_threshold)
public void reset()
public static void main(java.lang.String[] args)
(Last modified: 11/26/03)
args[1or2]
- gene tree file name (in NHX format with species names in
species name fields and sequence names in sequence name
fields; unless -n option is used)