org.biojava3.protmod.structure
public interface ModifiedCompound
Modifier and Type | Method and Description |
---|---|
boolean |
addAtomLinkage(StructureAtomLinkage linkage)
Add a linkage.
|
void |
addAtomLinkages(java.util.Collection<StructureAtomLinkage> linkages)
Add a collections of linkages.
|
boolean |
crossChains() |
java.util.Set<StructureAtomLinkage> |
getAtomLinkages() |
java.lang.String |
getDescription()
return a description of this compound
|
java.util.Set<StructureGroup> |
getGroups() |
java.util.Set<StructureGroup> |
getGroups(boolean isAminoAcid) |
ProteinModification |
getModification() |
void |
setAtomLinkages(java.util.Set<StructureAtomLinkage> linkages)
Set atom linkages
|
void |
setDescription(java.lang.String desc) |
void |
setGroups(java.util.Set<StructureGroup> groups) |
void |
setModification(ProteinModification modi) |
java.lang.String getDescription()
void setDescription(java.lang.String desc)
ProteinModification getModification()
ProteinModificationBean
occurred on the residue.void setModification(ProteinModification modi)
java.util.Set<StructureGroup> getGroups()
void setGroups(java.util.Set<StructureGroup> groups)
java.util.Set<StructureGroup> getGroups(boolean isAminoAcid)
isAminoAcid
- true if amino acids.java.util.Set<StructureAtomLinkage> getAtomLinkages()
#getLinkedGroupPairs
,
StructureAtomLinkage
void setAtomLinkages(java.util.Set<StructureAtomLinkage> linkages)
boolean addAtomLinkage(StructureAtomLinkage linkage)
addGroup
.linkage
- an atom linkage.StructureAtomLinkage
void addAtomLinkages(java.util.Collection<StructureAtomLinkage> linkages)
linkages
- an atom linkage.boolean crossChains()