org.biojava.bio.structure.io
public class LocalCacheStructureProvider extends java.lang.Object implements StructureProvider
Modifier and Type | Field and Description |
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static java.lang.String |
lineSplit |
Constructor and Description |
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LocalCacheStructureProvider() |
Modifier and Type | Method and Description |
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Structure |
getBiologicalUnit(java.lang.String pdbId)
Returns the first available biological unit for the PDB ID.
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FileParsingParameters |
getFileParsingParameters()
Get the parameters that should be used for file parsing
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java.lang.String |
getPath()
Returns the path value.
|
Structure |
getStructureById(java.lang.String pdbId)
get the structure for a PDB ID
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void |
setFileParsingParameters(FileParsingParameters params)
Set the parameters that should be used for file parsing
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void |
setPath(java.lang.String p)
directory where to find PDB files
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public void setPath(java.lang.String p)
public java.lang.String getPath()
setPath(java.lang.String)
public Structure getStructureById(java.lang.String pdbId) throws java.io.IOException
StructureProvider
getStructureById
in interface StructureProvider
java.io.IOException
public Structure getBiologicalUnit(java.lang.String pdbId) throws StructureException, java.io.IOException
getBiologicalUnit
in interface StructureProvider
java.io.IOException
StructureException
public void setFileParsingParameters(FileParsingParameters params)
StructureProvider
setFileParsingParameters
in interface StructureProvider
params
- FileParsingParameterspublic FileParsingParameters getFileParsingParameters()
StructureProvider
getFileParsingParameters
in interface StructureProvider