org.forester.pccx
public class BranchLengthBasedScoringMethod extends BranchCountingBasedScoringMethod
Modifier and Type | Field and Description |
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static double |
MIN_ALLOWED_BL_VALUE |
Constructor and Description |
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BranchLengthBasedScoringMethod() |
Modifier and Type | Method and Description |
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java.lang.String |
getDesciption()
This returns a short description of this scoring method
|
double |
getNormalizationFactor(Phylogeny phylogeny)
This calculates a normalization factor, so that a normalized score of 1.0
means complete coverage.
|
calculateScoreForExternalNode
public static final double MIN_ALLOWED_BL_VALUE
public java.lang.String getDesciption()
ScoringMethodForExternalNode
getDesciption
in interface ScoringMethodForExternalNode
getDesciption
in class BranchCountingBasedScoringMethod
public double getNormalizationFactor(Phylogeny phylogeny)
ScoringMethodForExternalNode
getNormalizationFactor
in interface ScoringMethodForExternalNode
getNormalizationFactor
in class BranchCountingBasedScoringMethod
phylogeny
- Phylogeny containing the external nodes to score