org.biojava.bio.structure.align.pairwise
public class AlignmentResult extends java.lang.Object implements java.io.Serializable
Constructor and Description |
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AlignmentResult() |
Modifier and Type | Method and Description |
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static AlignmentResult |
deserialize(java.io.File output) |
AlternativeAlignment[] |
getAlignments() |
long |
getCalculationTime() |
java.lang.String |
getChain1() |
java.lang.String |
getChain2() |
long |
getIoTime() |
int |
getLength1() |
int |
getLength2() |
java.lang.String |
getPdb1() |
java.lang.String |
getPdb2() |
void |
serialize(java.io.File output) |
void |
setAlignments(AlternativeAlignment[] alignments)
we only keep the first alternative...
|
void |
setCalculationTime(long calculationTime) |
void |
setChain1(java.lang.String chain1) |
void |
setChain2(java.lang.String chain2) |
void |
setIoTime(long ioTime) |
void |
setLength1(int length1) |
void |
setLength2(int length2) |
void |
setPdb1(java.lang.String pdb1) |
void |
setPdb2(java.lang.String pdb2) |
java.lang.String |
toString() |
public java.lang.String toString()
toString
in class java.lang.Object
public AlternativeAlignment[] getAlignments()
public void setAlignments(AlternativeAlignment[] alignments)
alignments
- public java.lang.String getPdb1()
public void setPdb1(java.lang.String pdb1)
public java.lang.String getPdb2()
public void setPdb2(java.lang.String pdb2)
public java.lang.String getChain1()
public void setChain1(java.lang.String chain1)
public java.lang.String getChain2()
public void setChain2(java.lang.String chain2)
public int getLength1()
public void setLength1(int length1)
public int getLength2()
public void setLength2(int length2)
public long getCalculationTime()
public void setCalculationTime(long calculationTime)
public long getIoTime()
public void setIoTime(long ioTime)
public void serialize(java.io.File output) throws java.io.FileNotFoundException, java.io.IOException
java.io.FileNotFoundException
java.io.IOException
public static AlignmentResult deserialize(java.io.File output) throws java.io.FileNotFoundException, java.io.IOException, java.lang.ClassNotFoundException
java.io.FileNotFoundException
java.io.IOException
java.lang.ClassNotFoundException