pal.eval
public class DemographicLikelihoodValue extends LikelihoodValue
logL, rateAtSite, siteLogL
Constructor and Description |
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DemographicLikelihoodValue(SitePattern sp)
Parameter taking a site pattern.
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Modifier and Type | Method and Description |
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double |
compute()
compute log-likelihood
for current branch lengths and model
return negative log-likelihood
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getModel, getSitePattern, getTree, optimiseParameters, optimiseParameters, renewSitePattern, setModel, setTree
public DemographicLikelihoodValue(SitePattern sp)
public double compute()
compute
in class LikelihoodValue