pal.coalescent
public class IntervalsExtractor extends java.lang.Object implements Units
DAYS, EXPECTED_SUBSTITUTIONS, GENERATIONS, MONTHS, SAMPLE, SHORT_UNIT_NAMES, UNIT_NAMES, UNKNOWN, YEARS
Constructor and Description |
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IntervalsExtractor() |
Modifier and Type | Method and Description |
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static CoalescentIntervals |
extractFromClockTree(Tree tree)
extracts intervals from clock tree.
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static CoalescentIntervals |
extractFromClockTree(Tree tree,
double minSize)
extracts intervals from clock tree.
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static CoalescentIntervals |
extractFromTree(Tree tree)
extracts intervals from serial clock tree.
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static CoalescentIntervals |
extractFromTree(Tree tree,
MutationRateModel muModel)
extracts intervals in generation times from serial clock tree (in mutation times)
after taking into account mutation rate model.
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public static CoalescentIntervals extractFromClockTree(Tree tree)
public static CoalescentIntervals extractFromClockTree(Tree tree, double minSize)
public static CoalescentIntervals extractFromTree(Tree tree, MutationRateModel muModel)
public static CoalescentIntervals extractFromTree(Tree tree)