pal.alignment
public interface CharacterAlignment extends java.io.Serializable, IdGroup, Report, TableReport
IdGroup.Utils
Modifier and Type | Field and Description |
---|---|
static double |
MISSING |
Modifier and Type | Method and Description |
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java.lang.String |
getEnvironmentName(int trait)
Return name of the environments for this trait number
|
int |
getSequenceCount()
Return number of sequences(taxa) in this alignment
|
double |
getTrait(int seq,
int trait)
Return the trait value for a given sequence (taxon) and trait number
|
int |
getTraitCount()
Return number of traits for each sequence in this alignment
|
java.lang.String |
getTraitName(int trait)
Return name of the trait for this trait number
|
getIdCount, getIdentifier, setIdentifier, whichIdNumber
getTableColumnNames, getTableData, getTableTitle
static final double MISSING
java.lang.String getTraitName(int trait)
java.lang.String getEnvironmentName(int trait)
double getTrait(int seq, int trait)
int getSequenceCount()
int getTraitCount()