pal.eval
public static final class SimpleUnconstrainedLikelihoodModel.LeafImpl extends java.lang.Object implements UnconstrainedLikelihoodModel.Leaf
Constructor and Description |
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SimpleUnconstrainedLikelihoodModel.LeafImpl(LHCalculator.Leaf base,
SubstitutionModel model) |
Modifier and Type | Method and Description |
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UnconstrainedLikelihoodModel.Leaf |
getCopy()
Create a new Leaf calculator that has exactly the same properties as this one (but is different such that it may be used independently)
|
ConditionalProbabilityStore |
getExtendedConditionalProbabilities(double distance) |
ConditionalProbabilityStore |
getFlatConditionalProbabilities() |
public SimpleUnconstrainedLikelihoodModel.LeafImpl(LHCalculator.Leaf base, SubstitutionModel model)
public ConditionalProbabilityStore getFlatConditionalProbabilities()
getFlatConditionalProbabilities
in interface UnconstrainedLikelihoodModel.Leaf
public ConditionalProbabilityStore getExtendedConditionalProbabilities(double distance)
getExtendedConditionalProbabilities
in interface UnconstrainedLikelihoodModel.Leaf
public UnconstrainedLikelihoodModel.Leaf getCopy()
UnconstrainedLikelihoodModel.Leaf
getCopy
in interface UnconstrainedLikelihoodModel.Leaf