pal.supgma
public interface RateHandler
Modifier and Type | Interface and Description |
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static class |
RateHandler.Utils |
Modifier and Type | Method and Description |
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void |
adjustDistances(double[][] matrix,
TimeOrderCharacterData tocd) |
void |
fillInLSInfo(double[] mRow,
int startingIndex,
int minSample,
int maxSample,
double[] sampleTimes) |
MutationRateModel.Factory |
generateRateModelFactory(double[] deltas,
TimeOrderCharacterData tocd) |
java.lang.String |
getInfo() |
int |
getNumberOfParameters(TimeOrderCharacterData tocd) |
boolean |
isCICompatible() |
int getNumberOfParameters(TimeOrderCharacterData tocd)
void adjustDistances(double[][] matrix, TimeOrderCharacterData tocd)
boolean isCICompatible()
java.lang.String getInfo()
void fillInLSInfo(double[] mRow, int startingIndex, int minSample, int maxSample, double[] sampleTimes)
MutationRateModel.Factory generateRateModelFactory(double[] deltas, TimeOrderCharacterData tocd)