pal.eval
public static interface MolecularClockLikelihoodModel.Instance extends java.io.Serializable
Modifier and Type | Method and Description |
---|---|
ConditionalProbabilityStore |
createAppropriateConditionalProbabilityStore(boolean isForLeaf) |
MolecularClockLikelihoodModel.External |
createNewExternal(MolecularClockLikelihoodModel.HeightConverter converter) |
MolecularClockLikelihoodModel.Internal |
createNewInternal(MolecularClockLikelihoodModel.HeightConverter converter) |
MolecularClockLikelihoodModel.Leaf |
createNewLeaf(MolecularClockLikelihoodModel.HeightConverter converter,
PatternInfo pattern,
int[] patternStateMatchup) |
NeoParameterized |
getParameterAccess() |
java.lang.String |
getSubstitutionModelSummary() |
java.lang.String getSubstitutionModelSummary()
MolecularClockLikelihoodModel.Leaf createNewLeaf(MolecularClockLikelihoodModel.HeightConverter converter, PatternInfo pattern, int[] patternStateMatchup)
MolecularClockLikelihoodModel.External createNewExternal(MolecularClockLikelihoodModel.HeightConverter converter)
MolecularClockLikelihoodModel.Internal createNewInternal(MolecularClockLikelihoodModel.HeightConverter converter)
ConditionalProbabilityStore createAppropriateConditionalProbabilityStore(boolean isForLeaf)
NeoParameterized getParameterAccess()