Package | Description |
---|---|
pal.tree |
Classes for providing the data structure of
trees, for constructing and modifying trees, and for parameterizing
trees (e.g., clock constraint).
|
Modifier and Type | Interface and Description |
---|---|
interface |
TreeIterator |
Modifier and Type | Method and Description |
---|---|
static TreeGenerator |
TreeGenerator.Utils.createNeighbourJoiningGenerator(DistanceMatrixGenerator dataGenerator,
java.lang.String[] outgroupNames) |
Modifier and Type | Method and Description |
---|---|
static Tree |
TreeUtils.getReplicateCladeSupport(java.lang.String attributeName,
Tree baseTree,
TreeGenerator treeGenerator,
int numberOfReplicates,
AlgorithmCallback callback)
Generates a tree which is identical to baseTree but has attributes (defined by attributeName)
at all internal nodes excluding the root node signifying (as a value between 0 and 100) the replicate
support by clade (that is the proportion of replicates that produce the sub clade under that node)
|