pal.util
public interface XMLConstants
Modifier and Type | Field and Description |
---|---|
static java.lang.String |
A_TO_C |
static java.lang.String |
A_TO_G |
static java.lang.String |
A_TO_T |
static java.lang.String |
ALIGNMENT |
static java.lang.String |
ALPHA |
static java.lang.String |
ANCESTRAL_MU_RATE |
static java.lang.String |
ANCESTRAL_POP_SIZE |
static java.lang.String |
ATTRIBUTE |
static java.lang.String |
BACKWARDS |
static java.lang.String |
BLOSUM62 |
static java.lang.String |
C_TO_G |
static java.lang.String |
C_TO_T |
static java.lang.String |
COALESCENT |
static java.lang.String |
CONST_EXP_CONST |
static java.lang.String |
CONST_EXP_GROWTH |
static java.lang.String |
CONSTANT_MUTATION_RATE |
static java.lang.String |
CONSTANT_POPULATION
constant population demographic model type
|
static java.lang.String |
CPREV |
static java.lang.String |
CURRENT_POP_SIZE_DURATION |
static java.lang.String |
DATA_TYPE |
static java.lang.String |
DATA_TYPE_ID |
static java.lang.String |
DAYHOFF |
static java.lang.String |
DAYS |
static java.lang.String |
DEMOGRAPHIC_MODEL |
static java.lang.String |
DIRECTION |
static java.lang.String |
EDGE |
static java.lang.String |
EXPANDING_POPULATION |
static java.lang.String |
EXPONENTIAL_GROWTH |
static java.lang.String |
F81 |
static java.lang.String |
F84 |
static java.lang.String |
FREQUENCIES |
static java.lang.String |
G_TO_T |
static java.lang.String |
GAMMA_ALPHA |
static java.lang.String |
GAMMA_DISTRIBUTION |
static java.lang.String |
GENERATIONS |
static java.lang.String |
GROWTH_PHASE_DURATION |
static java.lang.String |
GROWTH_RATE |
static java.lang.String |
GTR |
static java.lang.String |
HEIGHT |
static java.lang.String |
HKY |
static java.lang.String |
ID |
static java.lang.String |
JC |
static java.lang.String |
JTT |
static java.lang.String |
KAPPA |
static java.lang.String |
LENGTH |
static java.lang.String |
MISSING |
static java.lang.String |
MODEL |
static java.lang.String |
MONTHS |
static java.lang.String |
MTREV24 |
static java.lang.String |
MU_STEP_TIME |
static java.lang.String |
MUTATION_RATE |
static java.lang.String |
MUTATION_RATE_MODEL |
static java.lang.String |
MUTATIONS |
static java.lang.String |
NAME |
static java.lang.String |
NODE |
static java.lang.String |
NUMBER_CATEGORIES |
static java.lang.String |
OMEGA |
static java.lang.String |
ORIGIN |
static java.lang.String |
PARAMETER |
static java.lang.String |
POPULATION_SIZE |
static java.lang.String |
PYRIMIDINE_PURINE_RATIO |
static java.lang.String |
RATE_DISTRIBUTION |
static java.lang.String |
RATE_MATRIX |
static java.lang.String |
SEQUENCE |
static int |
SPACES_PER_LEVEL |
static java.lang.String |
STEPPED_MUTATION_RATE |
static java.lang.String |
TIME |
static java.lang.String |
TIME_DATA |
static java.lang.String |
TN |
static java.lang.String |
TREE |
static java.lang.String |
TS_TV_RATIO |
static java.lang.String |
TWO_STATE |
static java.lang.String |
TYPE |
static java.lang.String |
UNIFORM |
static java.lang.String |
UNIFORM_RATE_DISTRIBUTION |
static java.lang.String |
UNITS |
static java.lang.String |
UNKNOWN |
static java.lang.String |
VALUE |
static java.lang.String |
VT |
static java.lang.String |
WAG |
static java.lang.String |
YANG_CODON_MODEL |
static java.lang.String |
YEARS |
static final int SPACES_PER_LEVEL
static final java.lang.String DEMOGRAPHIC_MODEL
static final java.lang.String MUTATION_RATE_MODEL
static final java.lang.String RATE_MATRIX
static final java.lang.String TREE
static final java.lang.String FREQUENCIES
static final java.lang.String PARAMETER
static final java.lang.String NODE
static final java.lang.String EDGE
static final java.lang.String ALIGNMENT
static final java.lang.String SEQUENCE
static final java.lang.String TIME
static final java.lang.String TIME_DATA
static final java.lang.String ATTRIBUTE
static final java.lang.String TYPE
static final java.lang.String NAME
static final java.lang.String VALUE
static final java.lang.String UNITS
static final java.lang.String MODEL
static final java.lang.String ID
static final java.lang.String HEIGHT
static final java.lang.String LENGTH
static final java.lang.String DATA_TYPE
static final java.lang.String DATA_TYPE_ID
static final java.lang.String DIRECTION
static final java.lang.String ORIGIN
static final java.lang.String MISSING
static final java.lang.String COALESCENT
static final java.lang.String CONSTANT_POPULATION
static final java.lang.String EXPONENTIAL_GROWTH
static final java.lang.String CONST_EXP_GROWTH
static final java.lang.String EXPANDING_POPULATION
static final java.lang.String CONST_EXP_CONST
static final java.lang.String CONSTANT_MUTATION_RATE
static final java.lang.String STEPPED_MUTATION_RATE
static final java.lang.String UNIFORM
static final java.lang.String MUTATION_RATE
static final java.lang.String ANCESTRAL_MU_RATE
static final java.lang.String MU_STEP_TIME
static final java.lang.String POPULATION_SIZE
static final java.lang.String GROWTH_RATE
static final java.lang.String ALPHA
static final java.lang.String ANCESTRAL_POP_SIZE
static final java.lang.String CURRENT_POP_SIZE_DURATION
static final java.lang.String GROWTH_PHASE_DURATION
static final java.lang.String GENERATIONS
static final java.lang.String DAYS
static final java.lang.String MONTHS
static final java.lang.String YEARS
static final java.lang.String MUTATIONS
static final java.lang.String TWO_STATE
static final java.lang.String JC
static final java.lang.String F81
static final java.lang.String F84
static final java.lang.String HKY
static final java.lang.String GTR
static final java.lang.String TN
static final java.lang.String WAG
static final java.lang.String JTT
static final java.lang.String VT
static final java.lang.String CPREV
static final java.lang.String BLOSUM62
static final java.lang.String MTREV24
static final java.lang.String DAYHOFF
static final java.lang.String YANG_CODON_MODEL
static final java.lang.String A_TO_C
static final java.lang.String A_TO_G
static final java.lang.String A_TO_T
static final java.lang.String C_TO_G
static final java.lang.String C_TO_T
static final java.lang.String G_TO_T
static final java.lang.String KAPPA
static final java.lang.String OMEGA
static final java.lang.String PYRIMIDINE_PURINE_RATIO
static final java.lang.String TS_TV_RATIO
static final java.lang.String UNKNOWN
static final java.lang.String BACKWARDS
static final java.lang.String UNIFORM_RATE_DISTRIBUTION
static final java.lang.String GAMMA_DISTRIBUTION
static final java.lang.String RATE_DISTRIBUTION
static final java.lang.String NUMBER_CATEGORIES
static final java.lang.String GAMMA_ALPHA