pal.alignment
public class ConcatenatedAlignment extends AbstractAlignment
IdGroup.Utils
idGroup, numSeqs, numSites
Constructor and Description |
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ConcatenatedAlignment(Alignment[] list)
concatenate alignments
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Modifier and Type | Method and Description |
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char |
getData(int seq,
int site)
sequence alignment at (sequence, site)
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getAlignedSequenceString, getChar, getDataType, getIdCount, getIdentifier, getLength, getSequenceCount, getSiteCount, getState, getStates, guessDataType, isGap, isUnknownState, report, setDataType, setIdentifier, toString, whichIdNumber
public ConcatenatedAlignment(Alignment[] list) throws java.lang.IllegalArgumentException
Alignment
- array with alignment to concatenatejava.lang.IllegalArgumentException
public char getData(int seq, int site)
getData
in interface Alignment
getData
in class AbstractAlignment