jebl.evolution.alignments
public interface Pattern
Modifier and Type | Method and Description |
---|---|
int |
getLength() |
State |
getMostFrequentState()
Returns the most frequent state in this pattern
|
SequenceType |
getSequenceType() |
State |
getState(int index)
Get the state for the ith taxon
|
double |
getStateFrequency(State state)
Returns the frequent of the given state in this pattern
|
java.util.List<State> |
getStates() |
java.util.Set<State> |
getStateSet() |
java.util.List<Taxon> |
getTaxa() |
double |
getWeight()
Get the weight of this pattern
|
SequenceType getSequenceType()
int getLength()
java.util.List<Taxon> getTaxa()
State getState(int index)
index
- java.util.List<State> getStates()
java.util.Set<State> getStateSet()
double getWeight()
State getMostFrequentState()
double getStateFrequency(State state)
state
- http://code.google.com/p/jebl2/