Package | Description |
---|---|
jebl.evolution.align |
Provides classes and interfaces for pairwise alignment of two sequences.
|
jebl.evolution.coalescent | |
jebl.evolution.io | |
jebl.evolution.parsimony | |
jebl.evolution.treemetrics | |
jebl.evolution.trees | |
jebl.evolution.treesimulation |
Class and Description |
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RootedTree
A tree with a root (node with maximum height).
|
Tree
A rooted or unrooted tree.
|
TreeBuilderFactory.DistanceModel
Supported pairwise distance methods
|
TreeBuilderFactory.Method
Supported methods for tree building
|
Class and Description |
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RootedTree
A tree with a root (node with maximum height).
|
Class and Description |
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Tree
A rooted or unrooted tree.
|
Class and Description |
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Tree
A rooted or unrooted tree.
|
Class and Description |
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RootedTree
A tree with a root (node with maximum height).
|
Class and Description |
---|
CladeSystem
Stores a set of unique clades for a tree
|
ClusteringTreeBuilder
An abstract base class for clustering algorithms from pairwise distances
|
ConsensusTreeBuilder
A
TreeBuilder that builds a consensus tree for a set of trees on identical leaf sets. |
ConsensusTreeBuilder.Method
Supported consensus methods.
|
FilteredRootedTree |
ReRootedTree.RootingType |
RootedTree
A tree with a root (node with maximum height).
|
SortedRootedTree.BranchOrdering |
SplitSystem
data structure for a set of splits
|
TransformedRootedTree.Transform |
Tree
A rooted or unrooted tree.
|
TreeBiPartitionInfo
Work in progress
|
TreeBiPartitionInfo.DistanceNorm |
TreeBuilder |
TreeBuilderFactory.ConsensusMethod
Supported consensus methods.
|
TreeBuilderFactory.DistanceModel
Supported pairwise distance methods
|
TreeBuilderFactory.Method
Supported methods for tree building
|
TreeChangeEvent
Represents a change to a tree.
|
TreeSelectionChangeEvent
Represents a change to the selected nodes in a tree.
|
Class and Description |
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RootedTree
A tree with a root (node with maximum height).
|
http://code.google.com/p/jebl2/