jebl.evolution.align
public class SequenceAlignmentsDistanceMatrix extends BasicDistanceMatrix
Constructor and Description |
---|
SequenceAlignmentsDistanceMatrix(java.util.List<Sequence> seqs,
PairwiseAligner aligner,
ProgressListener progress) |
SequenceAlignmentsDistanceMatrix(java.util.List<Sequence> seqs,
PairwiseAligner aligner,
ProgressListener progress,
TreeBuilderFactory.DistanceModel model) |
Modifier and Type | Method and Description |
---|---|
static TreeBuilderFactory.DistanceModel |
getDefaultDistanceModel(java.util.List<Sequence> seqs) |
getDistance, getDistance, getDistances, getSize, getSubmatrix, getTaxa
public SequenceAlignmentsDistanceMatrix(java.util.List<Sequence> seqs, PairwiseAligner aligner, ProgressListener progress) throws CannotBuildDistanceMatrixException
public SequenceAlignmentsDistanceMatrix(java.util.List<Sequence> seqs, PairwiseAligner aligner, ProgressListener progress, TreeBuilderFactory.DistanceModel model) throws CannotBuildDistanceMatrixException
public static TreeBuilderFactory.DistanceModel getDefaultDistanceModel(java.util.List<Sequence> seqs)
http://code.google.com/p/jebl2/