jebl.evolution.substmodel
public abstract class AminoAcidModel extends AbstractRateMatrix
getDimension, getEquilibriumFrequencies, getEquilibriumFrequency, getRelativeRates, getSequenceType, getTransitionProbabilities, getTransitionProbability, rebuild, scale, setDistance, setDistanceTranspose, setParametersNoScale
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
getUniqueName
http://code.google.com/p/jebl2/