Package | Description |
---|---|
jebl.evolution.coalescent |
Modifier and Type | Class and Description |
---|---|
class |
Intervals
A concrete class for a set of coalescent intevals.
|
Modifier and Type | Method and Description |
---|---|
static double |
Coalescent.calculateAnalyticalLogLikelihood(IntervalList intervals)
Calculates the log likelihood of this set of coalescent intervals,
using an analytical integration over theta.
|
static double |
Coalescent.calculateLogLikelihood(IntervalList intervals,
DemographicFunction demographicFunction)
Calculates the log likelihood of this set of coalescent intervals,
given a demographic model.
|
static int |
IntervalList.Utils.getLineageCount(IntervalList intervals,
double t) |
Constructor and Description |
---|
Coalescent(IntervalList intervals,
DemographicFunction demographicFunction) |
http://code.google.com/p/jebl2/